Publications

2008

R. Singh A Review of Algorithmic Techniques for Disulfide-Bond Determination, Briefings in Functional Genomics and Proteomics, 2008, Vol. 7, pp. 157-172, 2008

B. Dalziel, H. Yang, R. Singh, M. Gormley, and S. J. Fisher, XMAS: An Experiential Approach for Visualization, Analysis, and Exploration of Time Series Microarray Data, International Conference on Bioinformatics Research and Development (BIRD), 2008

T. Lee and R. Singh, Comparative Analysis of Disulfide Bond Determination Using Computational-Predictive Methods and Mass Spectrometry-Based Algorithmic Analysis, International Conference on Bioinformatics Research and Development (BIRD), 2008

C. Phong and R. Singh, Missing Value Estimation for Time Series Microarray Data Using Linear Dynamical Systems Modeling, IEEE International Symposium on Bioinformatics and Life Science Modeling and Computing (BLSM), pp. 814 819, 2008

T. Sayre and R. Singh, Protein Structure Alignment and Comparison Using Residue Contexts, IEEE International Symposium on Bioinformatics and Life Science Modeling and Computing (BLSM), pp 796 801, 2008

2007

R. Singh, Surface Similarity-Based Molecular Query-Retrieval, BMC Cell-Biology, Vol. 8, Suppl.1 (S6): July, 2007

P. Malik, T. Chan, J. Vandergriff, J. Weisman, J. DeRisi, and R. Singh, Information Management and Interaction in High-Throughput Screening for Drug Discovery, in Biological Database Modeling J. Chen and A. Sandhu eds., Artech House 2007

R. Singh and J. C. Pinzon, Study and Analysis of User Behavior and Usage Patterns in a Unified Personal Multimedia Information Environment, IEEE International Conference on Multimedia and Expo (ICME), pp.1031 1034, 2007

B. D. Bhattarai, M. Wong, and R. Singh, "Discovering User Information Goals with Semantic Website Media Modeling", ACM International Conference on Multi-Media Modeling (MMM), Lecture Notes in Computer Science, Vol. 4351, pp. 364 375, 2007

T. Lee, R. Singh, R. Yen, and B. Macher, An Algorithmic Approach to Automated High-Throughput Identification of Disulfide Connectivity in Proteins Using Tandem Mass Spectrometry, Computational Systems Bioinformatics Conference (CSB), pp. 41 51, 2007

R. Singh and Ya-W Hsu, Analysis of Usage Patterns in Experiential Multiple Perspective Web-Search, ACM Multimedia, pp. 569 572, 2007

J. Lipinski-Kruzka and R. Singh, Integrative Geometric-Hashing Approaches to Binding Site Modeling and Ligand-Protein Interaction Prediction, International Symposium on Visual Computing (ISVC), Lecture Notes in Computer Science, Vol. 4841, pp. 179-188, Springer Verlag, 2007

R. Singh, C. Massa, and P-Y Corlobe, "Multifaceted Hyperimage-Based Organization and Interaction with Bio-Medical Images", IEEE International Symposium on Computer-Based Medical Systems (CBMS), pp. 153 158, 2007

R Bierman and R. Singh, "Influence of Dictionary Size on the Lossless Compression of Microarray Images", IEEE International Symposium on Computer-Based Medical Systems (CBMS), pp. 237 242, 2007

T. Lee, R. Singh, R. Yen, and B. Macher, MS2DB: A Mass-Based Hashing Algorithm for the Identification of Disulfide Linkage Patterns in Protein Utilizing Mass Spectrometric Data, IEEE International Symposium on Computer-Based Medical Systems (CBMS), pp. 397 402, 2007

2006

R. Singh and R. Jain, From Information-Centric to Experiential Environments, in Interactive Computation: The New Paradigm, D. Goldin, S. Smolka, and P. Wegner, eds., Springer Verlag, pp. 323 351, 2006

Ya-W Hsu, N. Moon, and R. Singh, Designing Interaction Paradigms for Web-Information Search and Retrieval, IEEE/WIC/ACM Conference on Web-Intelligence (WI), 2006, pp. 815-822, 2006

T. Lam and R. Singh, Semantically Relevant Image Retrieval by Combining Image and Linguistic Analysis, International Symposium on Visual Computing (ISVC), Lecture Notes in Computer Science Vol. 4292, pp. 1686 - 1695, Springer Verlag, 2006

N. Moon, B. D. Bhattarai, and R. Singh, An Experiential Approach to Interacting with Biological Information, International Symposium on Visual Computing (ISVC), Lecture Notes in Computer Science Vol. 4292, pp. 1586 - 1595, Springer Verlag, 2006

R. Bierman, N. Maniyar, C. Parson, and R. Singh, MACE: Lossless Compression and Analysis of Microarray Images, ACM Symposium on Applied Computing (SAC), pp. 167 172, 2006

R. Singh, Molecular Informatics and Image Analysis, Workshop on Multiscale Biological Imaging, Data Mining, and Informatics, pp. 47-48, 2006

J. C. Pinzon, R. Singh, W. Taube, J. Galan, "Designing Interactions In Event-Based Unified Management Of Personal Multimedia Information", IEEE International Conference on Multimedia and Expo (ICME), pp. 337 340, 2006

E. Velasquez, E. Yera, and R. Singh, Determining Molecular Similarity for Drug Discovery Using the Wavelet Riemannian Metric, Sixth IEEE International Symposium on Bioinformatics and Biomedical Engineering (BIBE), pp. 261 268, 2006

N. Moon, Ya-W. Hsu, and R. Singh, A Multiple Perspective Interactive Approach for Web-Information Extraction and Exploration, Second International Workshop on Challenges in Web Information Retrieval and Integration, IEEE International Conference on Data Engineering (ICDE), pp. 51 60, 2006

T. Chan, P. Malik, and R. Singh, An Interactive Visualization-Based Approach for High Throughput Screening Information Management in Drug Discovery, IEEE Engineering in Medicine and Biology Conference (EMBC), pp. 5794 5797, 2006

R. Singh, E. Velasquez, P. Vijayant, and E. Yera, FreeFlowDB: Storage, Querying, and Interacting with Structure-Activity Information in High-Throughput Drug Discovery, IEEE International Symposium on Computer-Based Medical Systems (CBMS), pp. 75 80, 2006

T. Lee, R. Singh, R. Yen, and B. Macher, MS2DB: An Algorithmic Approach to Determine Disulfide Linkage Patterns in Proteins by Utilizing Tandem Mass Spectrometric Data, IEEE International Symposium on Computer-Based Medical Systems (CBMS), pp. 947 952, 2006

2005

R. Singh, Ya-W. Hsu, W. C. Sun, D. Chiture, and L. Yan, Rethinking the Presentation of Results from Web Search, IEEE International Conference on Multimedia and Expo (ICME), pp. 1492 1495, 2005

B. Zambrano, R. Singh, and B. Bhattarai, Using Linguistic Models for Image Retrieval, International Symposium on Visual Computing (ISVC), Lecture Notes in Computer Science Vol. 3804, pp. 494 - 501, Springer Verlag, 2005

J. C. Pinzon and R. Singh, Designing An Experiential Annotation System For Personal Multimedia Information Management, IASTED Conference on Human-Computer Interaction (IASTED-HCI), pp. 234 239, 2005

N. Moon and R. Singh, Experiments in Text-Based Mining and Analysis of Biological Information from MEDLINE on Functionally-Related Genes, 18^th International Conference on Systems Engineering, Special Session on Computer Infrastructure for Systems Biology, pp. 326 331, 2005, IEEE Press.

A. Vaughan, R. Singh, A. Shimoide, M. Fuse, I. Yoon, EigenPhenotypes: Towards an Algorithmic Framework for Phenotype Discovery, IEEE Computational Systems Bioinformatics Conference (CSB), pp. 77 78, 2005 (poster paper)

A. Shimode, I. Yoon, M. Fuse, H. C. Beale, and R. Singh, Automated Behavioral Phenotype Detection and Analysis Using Color-Based Motion Tracking, Canadian Conference on Computer and Robot Vision, pp. 370 377, 2005

2004

R. Singh, Reasoning About Molecular Similarity and Properties, IEEE Computational Systems Bioinformatics Conference (CSB), pp 266 - 277, 2004

D. Pack, R. Singh, S. Brennan, and R. Jain, An Event Model and its Implementation for Multimedia Information Representation and Retrieval, IEEE International Conference on Multimedia and Expo (ICME), 2004, pp. 1611 1614

R. Singh, Z. Li, P. Kim, D. Pack, and R. Jain, Event-Based Modeling and Processing of Digital Media, First ACM SIGMOD Workshop on Computer Vision Meets Databases (CVDB), pp. 19 26, 2004

B. Gong, R. Singh, and R. Jain, ResearchExplorer: Gaining Insights Through Exploration in Multimedia Scientific Data, ACM SIGMM International Workshop on Multimedia Information Retrieval (ACM MIR) pp. 7 - 14, 2004

R. Singh, R. L. Knickmeyer, P. Gupta, and R. Jain Designing Experiential Environments for Management of Personal Multimedia, ACM Multimedia pp. 496 - 499, 2004

R. Singh, A Computer Vision-Based Approach for Answering Molecular Similarity Queries, Asian Conference on Computer Vision (ACCV), 2004

B. Wu, R. Singh, P. Gupta, and R. Jain, eVitae: An Event-Based Electronic Chronicle, International Conference on Extending Database Technology (EDBT) pp. 834-836, 2004 (Demonstration paper)

R. Singh, Issues in Computational Modeling of Molecular Structure-Property Relationships in Real-World Settings, Conference on Systemics, Cybernetics, and Informatics (SCI), Vol. VII, pp. 63-68, 2004

Earlier Publications

R. Singh An Overview of Computational Knowledge Discovery and Pattern Analysis Problems in Contemporary Drug Discovery and Design, DIMACS Summer School Tutorial on New Frontiers in Data Mining, Rutgers University, Piscataway, NJ, August 2001
Available online at: http://dimacs.rutgers.edu/Workshops/MiningTutorial/

R. Singh, R. M. Voyles, D. Littau, and N. P. Papanikolopoulos, "Shape Morphing-Based Control of Robotic Visual Servoing", Autonomous Robots, Vol. 10, No. 3, pp. 317-338, 2001

R. Singh, V. Cherkassky, and N. P. Papanikolopoulos, "Self-Organizing Maps for the Skeletonization of Sparse Shapes", IEEE Transactions on Neural Networks, Vol. 11, No. 1, pp. 241-248, 2000

R. Singh and N. P. Papanikolopoulos, "Planar Shape Recognition by Shape Morphing", Pattern Recognition, Vol. 33, No. 10, pp. 1683-1699, 2000

M. J. Sullivan, N. P. Papanikolopoulos, R. Singh, and I. Pavlidis, "Using Active Deformable Models in Robotic Visual Servoing", in Control in Robotics and Automation: Sensor-Based Integration, pp. 91-113, B. Ghosh, N. Xi, and T. J. Tarn, eds. Academic Press, London, 1999

R. Singh, R. M. Voyles, D. Littau, and N. P. Papanikolopoulos, "Shape Recognition and Vision-Based Robot Control by Shape Morphing", IEEE International Conference on Information, Intelligence, and Systems (ICIIS), pp. 188 - 195, 1999

I. Pavlidis, R. Singh, and N. P. Papanikolopoulos, "On-Line Handwriting Recognition Using Physics-Based Shape Metamorphosis", Pattern Recognition, Vol. 31, No. 11, pp. 1589-1600, 1998

R. Singh, M. C. Wade, and N. P. Papanikolopoulos, "Letter-Level Shape Description by Skeletonization in Faded Documents, Fourth IEEE Workshop on Applications of Computer Vision (WACV), pp. 121-126, 1998

R. Singh, R. M. Voyles, D. Littau, and N. P. Papanikolopoulos, "Grasping Real Objects Using Virtual Images", IEEE International Conference on Decision and Control (CDC), pp. 3269 - 3274, 1998

R. Singh, R. M. Voyles, D. Littau, and N. P. Papanikolopoulos, "Pose Alignment of an Eye-In-Hand System Using Image Morphing", IEEE/RSJ International Conference on Robots and Systems (IROS), Vol. 2, pp 698 704, 1998

R. Singh, N. P. Papanikolopoulos, and V. Cherkassky, "Object Skeletons from Sparse Shapes in Industrial Image Settings", IEEE International Conference on Robotics and Automation (ICRA), Vol. 4, pp. 3388 - 3393, 1998

R. Singh, V. Cherkassky, and N. P. Papanikolopoulos, "Determining the Skeletal Description of Sparse Shapes", IEEE International Symposium on Computational Intelligence in Robotics and Automation (CIRA), pp 368-373, 1997

I. Pavlidis, R. Singh, and N. P. Papanikolopoulos, "An On-Line Handwritten Note Recognition Method Using Shape Metamorphosis", Fourth International Conference on Document Analysis and Recognition (ICDAR), Vol. 2, pp 914 - 918, 1997

R. Singh, I. Pavlidis, and N. P. Papanikolopoulos, "A Metamorphosis-Based Shape Recognition Method", International Conference on Digital Signal Processing (ICDSP), Vol. 2, pp. 679-682, 1997

R. Singh, I. Pavlidis, and N. P. Papanikolopoulos, "Recognition of 2D Shapes through Contour Metamorphosis", IEEE International Conference on Robotics and Automation (ICRA), Vol. 2, pp. 1651- 1656, 1997

I. Pavlidis, M. Sullivan, R. Singh, and N. P. Papanikolopoulos, "Improving the Performance of Model-Based Target Tracking through Automatic Selection of Control Points", Robotics and Manufacturing, Recent Trends in Research and Applications, Vol. 6, pp. 711-716, M. Jamshidi, F. Pin, and P.Dauchez, Eds. ASME Press, New York, 1996

I. Pavlidis, R. Singh, and N. P. Papanikolopoulos, "Recognition of On-Line Handwritten Patterns through Shape Metamorphosis", 13th International Conference on Pattern Recognition (ICPR), Vol. 3, pp. 18 - 22, 1996

V. Orlov, Ya. Dmitriev, and R. Singh, "Expert Shell Concepts in LAN Simulation", Krajowe Sympozjum Telekomunikacji, Referaty Sesji (Computer Networks Track), pp. 266-273, 1991