Biocomputing and Media Research Lab

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Publications

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2017

  • P. Skums, A. Zelikovsky, R. Singh, W. Gussler, Z. Dimitrova, S. Knyazev, I Mandric, S. Ramachandran, D. Campo, D. Jha, L. Bunimovich, E. Costenbader, C. Sexton, S. O’Conor, G-L Xia, Y. Khudyakov, “QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data”, Bioinformatics, 2017 (Accepted) (Joint corresponding authors: P. Skums, A. Zelikovsky, Y. Khudyakov and R. Singh) [PDF]
  • R. Eshleman and R. Singh, “Reconstructing the Temporal Progression of Biological Data Using Cluster Spanning Trees”, IEEE Transactions on NanoBioscience, Vol. 16, No. 2, pp. 140-147, 2017 (Corresponding author R. Singh) [PDF]
  • T. Olson* and R. Singh*, “Predicting Anatomic Therapeutic Chemical Classification Codes using Tiered Learning”, BMC Bioinformatics, Vol. 18 (Suppl 8): 266, 2017 (*T. Olson and R. Singh equal contributors. Corresponding author R. Singh) [PDF]
  • R. Eshleman, D. Jha, and R. Singh, “Identifying Individuals Amenable to Drug Recovery Interventions through Computational Analysis of Addiction Content in Social Media”, EEE International Conference on Bioinformatics and Biomedicine (BIBM)I, pp. 839-844, 2017 [PDF]
  • D. Jha, P. Skums, A. Zelikovsky, Y. Khudyakov, and R. Singh, “Modeling the Spread of HIV and HCV Infections Based on Identification and Characterization of High-Risk Communities Using Social Media”, International Symposium on Bioinformatics Research and Application (ISBRA) 2017, Lecture Notes in Computer Science, Vol. 10330, pp. 425-430, Springer, 2017 [PDF]

2016

  • R. Eshleman and R. Singh, “Leveraging Graph Topology and Semantic Context for Pharmacovigilance through Twitter Streams”, BMC Bioinformatics, Vol. 17, (Suppl 13):335, 2016. (Corresponding author R. Singh)[PDF]
  • R. Singh, R. Beasley, T. Long and C. Caffrey, “Algorithmic Mapping and Characterization of the Drug-Induced Phenotypic Response Space of Parasites Causing Schistosomiasis”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, To Appear. (Corresponding author R. Singh) [PDF]
  • J. Dohrmann and R. Singh, “The SMAL web server: global multiple network alignment from pairwise alignments”, Bioinformatics, Vol. 32 (21), pp. 3330-3332, 2016 (Corresponding author R. Singh)[PDF]
  • T. Long, R. J. Neitz, R. Beasley, C. Kalyanaraman, B. M. Suzuki, M. P. Jacobson, C. Dissous, J. H. McKerrow, D. H. Drewry, R. Singh, and C. R. Caffrey, “Structure-bioactivity relationship for benzimidazole thiophene inhibitors of polo-like-kinase 1 (PLK1), a potential drug target in Schistosoma mansoni”, PLoS Neglected Tropical Diseases, 10(1): e0004356, 2016. (Corresponding authors T. Long and C. R. Caffrey).[PDF]
  • R. Eshleman and R. Singh, "Progression Reconstruction from Unsynchronized Biological Data Using Cluster Spanning Trees", International Symposium on Bioinformatics Research and Application (ISBRA) 2016, Lecture Notes in Bioinformatics, Vol. 9683, pp. 136-147, Springer, 2016.[PDF]
  • R. Singh, "Computational Analysis of Drug Addiction Epidemiology by Integrating Molecular Mapping and Social Media Signals", 5th Workshop on Computational Advances in Molecular Epidemiology 2016 (Invited paper).

2015

  • J. Dohrmann, J. Puchin, and R. Singh, “Global Multiple Network Alignment by Combining Pairwise Network Alignments”, BMC Bioinformatics, Vol. 16, (Suppl 13):S11, 2015. (Corresponding author R. Singh) [PDF]
  • D. Asarnow*, L. R. Areola, B. Suzuki, C. Caffrey, and R. Singh*, “The QDREC Webserver: Determining Dose-Response Characteristics for Complex Macroparasites Using Phenotypic Drug Screening Data”, Bioinformatics, Vol. 31 (9), pp. 1515-1518, 2015 (*D. Asarnow and R. Singh equal contributors. Corresponding author R. Singh) [PDF]
  • T. Olson and R. Singh, “Computational Prediction of ATC Codes of Drug-Like Compounds Using Tiered Learning”, Proceeding of the Fifth IEEE International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 2015 [PDF]

2014

  • L. Rojo-Arreola, T. Long, D. Asarnow, B.M. Suzuki, R. Singh and C.R. Caffrey, "Chemical and genetic validation of the statin drug target for the potential treatment of the helminth disease, schistosomiasis," PLoS ONE, 9(1): e87594, 2014. (Corresponding author C.R. Caffrey). [PDF]
  • D. Asarnow and R. Singh, "Automatic Classification of Protein Structures Using Low-Dimensional Structure Space Mappings," BMC Bioinformatics, 15(Suppl 2):S1, 2014. (Corresponding author R. Singh). [PDF]
  • A. Gater and R. Singh, “Biological Image Indexing for Content-Based Retrieval of Drug Effects in Phenotypic Screening Data of Macroparasites,” IEEE International Symposium on Computer-Based Medical Systems (CBMS), 300-304, 2014. [PDF]

2013

  • R. Singh, H. Yang, B. Dalziel, D. Asarnow, W. Murad, D. Foote, M. Gromley, J. Stillman, and S. Fisher, "Towards Human-Computer Synergistic Analysis of Large-Scale Biological Data", BMC Bioinformatics, 14(Suppl 14):S10, 2013. (Corresponding author R. Singh). [PDF]
  • W. Murad and R. Singh, "The MS2DB++ Webserver: Disulfide Bond Determination through Evidence Combination", IEEE Transactions on NanoBioscience, vol. 12, no. 4, pp. 340-342, 2013. (Corresponding author R. Singh). [PDF]
  • D. Asarnow and R. Singh, "The Impact of Parameters and Structural Diversity in Maps of the Protein Universe," BMC Proceedings, 7 (Suppl 7):S1, 2013. (Corresponding author R. Singh) [PDF]
  • D. Asarnow and R. Singh, "Segmenting the Etiological Agent of Schistosomiasis for High-Content Screening," IEEE Transactions on Medical Imaging, vol. 32, no. 6, pp. 1007-10018, 2013. (Corresponding author R. Singh). [PDF]
  • R. Singh and W. Murad, "Protein disulfide topology determination through the fusion of mass spectrometric analysis and sequence-based prediction using Dempster-Shafer theory," BMC Bioinformatics, 14 (Suppl 2):S20, 2013. (Corresponding author R. Singh). [PDF]
  • W. Murad and R. Singh, "MS2DB+: A Software for Determination of Disulfide Bonds Using Multi-Ion Analysis", IEEE Transactions on NanoBioscience, vol. 12, no. 2, pp. 69-71, 2013. (Corresponding author R. Singh). [PDF]
  • A. Shimoide, I. Kimball, A. Gutierrez, H. Lim, I. Yoon, J. T. Birmingham, R. Singh* and M. Fuse*, "Quantification and Analysis of Ecdysis in the Hornworm Manduca Sexta Using Machine Vision-based Tracking", Invertebrate Neuroscience, 2013, (*R. Singh, and M. Fuse Joint Corresponding Authors). [PDF]
  • R. Singh, Ya-Wen Hsu, and N. Moon, "Multiple-Perspective Interactive Search: A Paradigm for Exploratory Search and Information Retrieval on the Web", Journal of Multimedia Tools and Applications, Vol. 62 (2), pp. 507-543, 2013, (Corresponding author R. Singh). [PDF]
  • R. Singh, W. Murad, and T. Lee, "Algorithmic Frameworks for Protein Disulfide-Connectivity Determination", Chapter 9, Algorithmic and AI Methods for Protein Bioinformatics, Yi Pan, J. Wang, and M. Li eds., Wiley, pp. 171-204, 2013. [PDF]
  • A. Peterman, M. J. Bennett, A. Frankel, and R. Singh, "Clustering PPI Networks of Mixed Host-Pathogen Data Using Biased Repeated Random Walks", International Symposium on Bioinformatics Research and Application (ISBRA), 2013. [PDF]

2012

  • H. Lee*, A. Moody-Davis, U. Saha, B. Suzuki, D. Asarnow, S. Chen, M. Arkin, C. Caffrey, and R. Singh*, "Quantification and Clustering of Phenotypic Screening Data Using Time Series Analysis for Chemotherapy of Schistosomiasis", BMC Genomics, 12 (Suppl 1):S4, 2012 (*H. Lee and R. Singh equal contributors. Corresponding author R. Singh). [PDF]
  • C. Marcellino, J. Gut, K. C. Lim, R. Singh, J. McKerrow, J. Sakanari, "WormAssay: A Novel Computer Application for Whole-Plate Screening of Macroscopic Parasites", PLoS Neglected Tropical Diseases, Vol. 6(1):e1494, 2012 (Corresponding author C. Marcellino). [PDF]
  • R. Singh, "Quantitative High-Content Screening-Based Drug Discovery against Helminthic Diseases", in Parasitic Helminths: Targets, Screens, Drugs, and Vaccines, Ed. C. Caffrey, Wiley-Blackwell, pp. 159-179 2012. [PDF]
  • H. Lee and R. Singh, "Unsupervised Kernel Parameter Estimation by Constrained Non-Linear Optimization for Clustering Non-Linear Biological Data", IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp. 1-6, 2012. [PDF]
  • N. D. Martinez, P. Tonin, B. Bauer, R. C. Rael, R. Singh, S. Yoon, I. Yoon, and J. A. Dunne, "Sustaining Economic Exploitation of Complex Ecosystems in Computational Models of Coupled Human-Natural Networks", Proceedings of the Twenty-Sixth AAAI Conference on Artificial Intelligence (AAAI), pp. 326-334, 2012. [PDF]
  • H. Lee and R. Singh, "Symbolic Representation and Clustering of Bio-Medical Time-Series Data Using Non-Parametric Segmentation and Cluster Ensemble," IEEE International Symposium on Computer Based Medical Systems (CBMS), pp. 1-6, 2012. [PDF]
  • D. Asarnow and R. Singh, "Segmentation of Parasites for High-Content Screening using Phase Congruency and Grayscale Morphology", International Symposium on Visual Computing (ISVC), Lecture Notes in Computer Science, Vol. 7431, pp. 51-60, Springer, 2012. [PDF]
  • U. Saha and R. Singh, "Vision-Based Tracking of Complex Macroparasites for High-Content Phenotypic Drug Screening", International Symposium on Visual Computing (ISVC), Lecture Notes in Computer Science, Vol. 7432, pp. 104-114, Springer, 2012. [PDF]

2011

  • W. Murad, R. Singh, and T-Y. Yen, "An Efficient Algorithmic Approach for Mass Spectrometry-Based Disulfide Connectivity Determination in Proteins Using Multi-Ion Analysis", BMC Bioinformatics, 12 (Suppl 1):S12, 2011 (Corresponding author: R. Singh). [PDF]
  • M. R. Arkin, S. Chen, B. Suzuki, V. Popescu, A. Renslo, J. A Wells, R. Singh and C. R. Caffrey, "Screening technologies for unusual and challenging targets", FASEB Journal. Vol. 25, No. 314.1, 2011 (Corresponding Author M. Arkin)
  • A. Moody-Davis, L. Mennillo and R. Singh, "Region Based Segmentation of Parasites for High-Throughput Screening," G. Bebis et al. (Eds.): International Symposium on Visiual Computing, Part I, LNCS 6938, pp. 44-54, 2011. [PDF]
  • A. Sasho, S. Zhu, and R. Singh, "Identification and Analysis of Cell Cycle Phase Genes by Clustering In Correspondence Subspaces", International Conference on Advances in Computing and Communications, 2011, Communications in Computer and Information Science, Volume 190, Part 4, 340-350. [PDF]
  • R. Singh, R. Nakata and J. Downs, "Characterizing Emergent Image Semantics using Network Models", IEEE International Conference on Semantic Computing pp. 411-418, 2011. [PDF]

2010

  • R. Singh and B. Bhattarai, "Dynamic Content Page Identification for Media-Rich Websites", Journal of Multimedia Tools and Application, Vol. 50, No. 3, pp. 491-507, 2010 (Corresponding author: R. Singh). [PDF]
  • R. Singh, "Learning and Prediction of Complex Molecular Structure-Property Relationships: Issues and Strategies for Modeling Intestinal Absorption for Drug Discovery", in Chemoinformatics and Advanced Machine Learning Perspectives: Complex Computational Methods and Collaborative Techniques, H. Lodhi and Y. Yamanishi eds., Idea House, 2010. [PDF]
  • R. Singh, B. and Bhattarai, "Analysis of Usage Patterns in Large Multimedia Websites" in Emergent Web Intelligence: Advanced Information Retrieval, R. Chbeir, A-E. Hassanien, A. Abraham, and Y. Badr eds., Advanced Information and Knowledge Processing, Springer Verlag, pp. 299-318, 2010. [PDF]
  • J. Kim and R. Singh, "Residue Contexts: Non-Sequential Protein Structure Alignment Using Structural and Biochemical Features", International Symposium on Bioinformatics Research and Application (ISBRA), 2010, Lecture Notes in Bioinformatics, Springer, pp. 77-88. [PDF]
  • R. Singh and B. D. Bhattarai, "Determining User Information Goals in Media-Rich Web Sites by Re-Thinking Information Scent Theory", IEEE International Conference on Multimedia and Expo (ICME), pp. 1061-1066, 2010 [PDF]
  • R. Singh, V. Popescu, L. Mennillo, B. Suzuki, and C. Caffrey, "Association Rule Discovery in Time-Series Phenomic Data", Bioimage Informatics, Carnegie-Mellon University, 2010 (peer-reviewed poster).

2009

  • W. Murad, R. Singh, and T-Y. Yen, "Polynomial Time Disulfide Bond Determination using Mass Spectrometry Data", IEEE Computational Structural Bioinformatics Workshop (CSBW), pp. 79-86, 2009. [PDF]
  • N. Postarnakevich and R. Singh, "Global-To-Local Representation and Visualization of Molecular Surfaces Using Deformable Models", ACM Symposium on Applied Computing (SAC), Bioinformatics Track, pp. 782-787, 2009. [PDF]
  • R. Singh and B. Bhattarai, "Information-Theoretic Identification of Content Pages for Analyzing User Information Needs and Actions on the Multimedia Web", ACM Symposium on Applied Computing (SAC), Multimedia and Visualization Track, pp. 1806-18010, 2009. [PDF]
  • R. Singh, M. Pittas, I. Heskia, F. Xu, J. H. McKerrow, and C. Caffrey, "Automated Image-Based Phenotypic Screening for High-Throughput Drug Discovery", IEEE Symposium on Computer-Based Medical Systems (CBMS), pp. 1-8, 2009. [PDF]
  • R. Singh, M. Pittas, I. Heskia, F. Xu, J. H. McKerrow, and C. Caffrey, "Automated Image-Based Phenotypic Screening of Multi-Cellular Pathogens for High-Throughput Drug Discovery", Bioimage Informatics, Howard Hughes Medical Institute, Janelia Farm, 2009 (peer-reviewed poster).

2008

  • R. Singh, "A Review of Algorithmic Techniques for Disulfide-Bond Determination", Briefings in Functional Genomics and Proteomics, 2008, Vol. 7, pp. 157-172, 2008. [PDF]
  • B. Dalziel, H. Yang, R. Singh, M. Gormley, and S. J. Fisher, "XMAS: An Experiential Approach for Visualization, Analysis, and Exploration of Time Series Microarray Data", International Conference on Bioinformatics Research and Development (BIRD), Communications in Computer and Information Science, Vol. 13, pp. 16-31, Springer Verlag, 2008. [PDF]
  • T. Lee and R. Singh, "Comparative Analysis of Disulfide Bond Determination Using Computational-Predictive Methods and Mass Spectrometry-Based Algorithmic Analysis", International Conference on Bioinformatics Research and Development (BIRD), Communications in Computer and Information Science, Vol. 13, pp. 140-153, Springer Verlag, 2008. [PDF]
  • C. Phong and R. Singh, "Missing Value Estimation for Time Series Microarray Data Using Linear Dynamical Systems Modeling", IEEE International Symposium on Bioinformatics and Life Science Modeling and Computing (BLSM), pp. 814-819, 2008. [PDF]
  • T. Sayre and R. Singh, "Protein Structure Alignment and Comparison Using Residue Contexts", IEEE International Symposium on Bioinformatics and Life Science Modeling and Computing (BLSM), pp 796-801, 2008. [PDF]

2007

  • R. Singh, "Surface Similarity-Based Molecular Query-Retrieval", BMC Cell-Biology, Vol. 8, Suppl.1 (S6): July, 2007. [PDF]
  • P. Malik, T. Chan, J. Vandergriff, J. Weisman, J. DeRisi, and R. Singh, "Information Management and Interaction in High-Throughput Screening for Drug Discovery", in Biological Database Modeling, J. Chen and A. Sandhu eds., Artech House 2007.
  • R. Singh and J. C. Pinzon, "Study and Analysis of User Behavior and Usage Patterns in a Unified Personal Multimedia Information Environment", IEEE International Conference on Multimedia and Expo (ICME), pp. 1031-1034, 2007. [PDF]
  • B. D. Bhattarai, M. Wong, and R. Singh, "Discovering User Information Goals with Semantic Website Media Modeling", ACM International Conference on Multi-Media Modeling (MMM), Lecture Notes in Computer Science, Vol. 4351, pp. 364-375, 2007. [PDF]
  • T. Lee, R. Singh, R. Yen, and B. Macher, "An Algorithmic Approach to Automated High-Throughput Identification of Disulfide Connectivity in Proteins Using Tandem Mass Spectrometry", Computational Systems Bioinformatics Conference (CSB), pp. 41-51, 2007. [PDF]
  • R. Singh and Y. W. Hsu, "Analysis of Usage Patterns in Experiential Multiple Perspective Web-Search", ACM Multimedia, pp. 569-572, 2007. [PDF]
  • J. Lipinski-Kruzka and R. Singh, "Integrative Geometric-Hashing Approaches to Binding Site Modeling and Ligand-Protein Interaction Prediction", International Symposium on Visual Computing (ISVC), Lecture Notes in Computer Science, Vol. 4841, pp. 179-188, Springer Verlag, 2007. [PDF]
  • R. Singh, C. Massa, and P-Y Corlobe, "Multifaceted Hyperimage-Based Organization and Interaction with Bio-Medical Images", IEEE International Symposium on Computer-Based Medical Systems(CBMS), pp. 153-158, 2007. [PDF]
  • R. Bierman and R. Singh, "Influence of Dictionary Size on the Lossless Compression of Microarray Images", IEEE International Symposium on Computer-Based Medical Systems (CBMS), pp. 237-242, 2007. [PDF]
  • T. Lee, R. Singh, R. Yen, and B. Macher, "MS2DB: A Mass-Based Hashing Algorithm for the Identification of Disulfide Linkage Patterns in Protein Utilizing Mass Spectrometric Data", IEEE International Symposium on Computer-Based Medical Systems (CBMS), pp. 397-402, 2007. [PDF]

2006

  • R. Singh and R. Jain, "From Information-Centric to Experiential Environments", in Interactive Computation: The New Paradigm, D. Goldin, S. Smolka, and P. Wegner, eds., Springer Verlag, pp. 323-351, 2006. [PDF]
  • Y.W. Hsu, N. Moon, and R. Singh, "Designing Interaction Paradigms for Web-Information Search and Retrieval", IEEE/WIC/ACM Conference on Web-Intelligence (WI), 2006, pp. 815-822, 2006. [PDF]
  • T. Lam and R. Singh, "Semantically Relevant Image Retrieval by Combining Image and Linguistic Analysis", International Symposium on Visual Computing (ISVC), Lecture Notes in Computer Science Vol. 4292, pp. 1686 - 1695, Springer Verlag, 2006. [PDF]
  • N. Moon, B. D. Bhattarai, and R. Singh, "An Experiential Approach to Interacting with Biological Information", International Symposium on Visual Computing (ISVC), Lecture Notes in Computer Science Vol. 4292, pp. 1586 - 1595, Springer Verlag, 2006. [PDF]
  • R. Bierman, N. Maniyar, C. Parson, and R. Singh, "MACE: Lossless Compression and Analysis of Microarray Images", ACM Symposium on Applied Computing (SAC), pp. 167-172, 2006. [PDF]
  • R. Singh, "Molecular Informatics and Image Analysis", Workshop on Multiscale Biological Imaging, Data Mining, and Informatics, pp. 47-48, 2006. [PDF]
  • J. C. Pinzon, R. Singh, W. Taube, J. Galan, "Designing Interactions In Event-Based Unified Management Of Personal Multimedia Information", IEEE International Conference on Multimedia and Expo (ICME), pp. 337-340, 2006. [PDF]
  • E. Velasquez, E. Yera, and R. Singh, "Determining Molecular Similarity for Drug Discovery Using the Wavelet Riemannian Metric", Sixth IEEE International Symposium on Bioinformatics and Biomedical Engineering (BIBE), pp. 261-268, 2006. [PDF]
  • N. Moon, Ya-W. Hsu, and R. Singh, "A Multiple Perspective Interactive Approach for Web-Information Extraction and Exploration", Second International Workshop on Challenges in Web Information Retrieval and Integration, IEEE International Conference on Data Engineering (ICDE), pp. 51-60, 2006. [PDF]
  • T. Chan, P. Malik, and R. Singh, "An Interactive Visualization-Based Approach for High Throughput Screening Information Management in Drug Discovery", IEEE Engineering in Medicine and Biology Conference (EMBC), pp. 5794-5797, 2006. [PDF]
  • R. Singh, E. Velasquez, P. Vijayant, and E. Yera, "FreeFlowDB: Storage, Querying, and Interacting with Structure-Activity Information in High-Throughput Drug Discovery", IEEE International Symposium on Computer-Based Medical Systems (CBMS), pp. 75-80, 2006. [PDF]
  • T. Lee, R. Singh, R. Yen, and B. Macher, "MS2DB: An Algorithmic Approach to Determine Disulfide Linkage Patterns in Proteins by Utilizing Tandem Mass Spectrometric Data", IEEE International Symposium on Computer-Based Medical Systems (CBMS), pp. 947-952, 2006. [PDF]

2005

  • R. Singh, Ya-W. Hsu, W. C. Sun, D. Chiture, and L. Yan, "Rethinking the Presentation of Results from Web Search", IEEE International Conference on Multimedia and Expo (ICME), pp. 1492-1495, 2005. [PDF]
  • B. Zambrano, R. Singh, and B. Bhattarai, "Using Linguistic Models for Image Retrieval", International Symposium on Visual Computing (ISVC), Lecture Notes in Computer Science Vol. 3804, pp. 494 - 501, Springer Verlag, 2005. [PDF]
  • J. C. Pinzon and R. Singh, "Designing An Experiential Annotation System For Personal Multimedia Information Management", IASTED Conference on Human-Computer Interaction (IASTED-HCI), pp. 234-239, 2005. [PDF]
  • N. Moon and R. Singh, "Experiments in Text-Based Mining and Analysis of Biological Information from MEDLINE on Functionally-Related Genes", 18thInternational Conference on Systems Engineering, Special Session on Computer Infrastructure for Systems Biology, pp. 326-331, 2005, IEEE Press. [PDF]
  • A. Vaughan, R. Singh, A. Shimoide, M. Fuse, I. Yoon, "EigenPhenotypes: Towards an Algorithmic Framework for Phenotype Discovery", IEEE Computational Systems Bioinformatics Conference (CSB), pp. 77-78, 2005 (poster paper). [PDF]
  • A. Shimode, I. Yoon, M. Fuse, H. C. Beale, and R. Singh, "Automated Behavioral Phenotype Detection and Analysis Using Color-Based Motion Tracking", Canadian Conference on Computer and Robot Vision, pp. 370-377, 2005. [PDF]

2004

  • R. Singh, "Reasoning About Molecular Similarity and Properties", IEEE Computational Systems Bioinformatics Conference (CSB), pp 266 - 277, 2004. [PDF]
  • D. Pack, R. Singh, S. Brennan, and R. Jain, "An Event Model and its Implementation for Multimedia Information Representation and Retrieval", IEEE International Conference on Multimedia and Expo (ICME), 2004, pp. 1611-1614. [PDF]
  • R. Singh, Z. Li, P. Kim, D. Pack, and R. Jain, "Event-Based Modeling and Processing of Digital Media", First ACM SIGMOD Workshop on Computer Vision Meets Databases (CVDB), pp. 19-26, 2004. [PDF]
  • B. Gong, R. Singh, and R. Jain, "ResearchExplorer: Gaining Insights Through Exploration in Multimedia Scientific Data", ACM SIGMM International Workshop on Multimedia Information Retrieval (ACM MIR), pp. 7 - 14, 2004. [PDF]
  • R. Singh, R. L. Knickmeyer, P. Gupta, and R. Jain, "Designing Experiential Environments for Management of Personal Multimedia", ACM Multimedia, pp. 496 - 499, 2004. [PDF]
  • R. Singh, "A Computer Vision-Based Approach for Answering Molecular Similarity Queries", Asian Conference on Computer Vision (ACCV), 2004. [PDF]
  • B. Wu, R. Singh, P. Gupta, and R. Jain, "eVitae: An Event-Based Electronic Chronicle", International Conference on Extending Database Technology (EDBT), pp. 834-836, 2004 (Demonstration paper).
  • R. Singh, "Issues in Computational Modeling of Molecular Structure-Property Relationships in Real-World Settings", Conference on Systemics, Cybernetics, and Informatics(SCI), Vol. VII, pp. 63-68, 2004.

Earlier Publications

  • R. Singh An Overview of Computational Knowledge Discovery and Pattern Analysis Problems in Contemporary Drug Discovery and Design, DIMACS Summer School Tutorial on New Frontiers in Data Mining, Rutgers University, Piscataway, NJ, August 2001. Available online.
  • R. Singh, R. M. Voyles, D. Littau, and N. P. Papanikolopoulos, "Shape Morphing-Based Control of Robotic Visual Servoing", Autonomous Robots, Vol. 10, No. 3, pp. 317-338, 2001. [PDF]
  • R. Singh, V. Cherkassky, and N. P. Papanikolopoulos, "Self-Organizing Maps for the Skeletonization of Sparse Shapes", IEEE Transactions on Neural Networks, Vol. 11, No. 1, pp. 241-248, 2000. [PDF]
  • R. Singh and N. P. Papanikolopoulos, "Planar Shape Recognition by Shape Morphing", Pattern Recognition, Vol. 33, No. 10, pp. 1683-1699, 2000. [PDF]
  • M. J. Sullivan, N. P. Papanikolopoulos, R. Singh, and I. Pavlidis, "Using Active Deformable Models in Robotic Visual Servoing", in Control in Robotics and Automation: Sensor-Based Integration, pp. 91-113, B. Ghosh, N. Xi, and T. J. Tarn, eds. Academic Press, London, 1999.
  • R. Singh, R. M. Voyles, D. Littau, and N. P. Papanikolopoulos, "Shape Recognition and Vision-Based Robot Control by Shape Morphing", IEEE International Conference on Information, Intelligence, and Systems (ICIIS), pp. 188 - 195, 1999. [PDF]
  • I. Pavlidis, R. Singh, and N. P. Papanikolopoulos, "On-Line Handwriting Recognition Using Physics-Based Shape Metamorphosis", Pattern Recognition, Vol. 31, No. 11, pp. 1589-1600, 1998. [PDF]
  • R. Singh, M. C. Wade, and N. P. Papanikolopoulos, "Letter-Level Shape Description by Skeletonization in Faded Documents", Fourth IEEE Workshop on Applications of Computer Vision (WACV), pp. 121-126, 1998. [PDF]
  • R. Singh, R. M. Voyles, D. Littau, and N. P. Papanikolopoulos, "Grasping Real Objects Using Virtual Images", IEEE International Conference on Decision and Control (CDC), pp. 3269 - 3274, 1998. [PDF]
  • R. Singh, R. M. Voyles, D. Littau, and N. P. Papanikolopoulos, "Pose Alignment of an Eye-In-Hand System Using Image Morphing", IEEE/RSJ International Conference on Robots and Systems (IROS), Vol. 2, pp 698-704, 1998. [PDF]
  • R. Singh, N. P. Papanikolopoulos, and V. Cherkassky, "Object Skeletons from Sparse Shapes in Industrial Image Settings", IEEE International Conference on Robotics and Automation (ICRA), Vol. 4, pp. 3388 - 3393, 1998.. [PDF]
  • R. Singh, V. Cherkassky, and N. P. Papanikolopoulos, "Determining the Skeletal Description of Sparse Shapes", IEEE International Symposium on Computational Intelligence in Robotics and Automation (CIRA), pp 368-373, 1997. [PDF]
  • I. Pavlidis, R. Singh, and N. P. Papanikolopoulos, "An On-Line Handwritten Note Recognition Method Using Shape Metamorphosis", Fourth International Conference on Document Analysis and Recognition (ICDAR), Vol. 2, pp 914 - 918, 1997. [PDF]
  • R. Singh, I. Pavlidis, and N. P. Papanikolopoulos, "A Metamorphosis-Based Shape Recognition Method", International Conference on Digital Signal Processing (ICDSP), Vol. 2, pp. 679-682, 1997. [PDF]
  • R. Singh, I. Pavlidis, and N. P. Papanikolopoulos, "Recognition of 2D Shapes through Contour Metamorphosis", IEEE International Conference on Robotics and Automation (ICRA), Vol. 2, pp. 1651- 1656, 1997. [PDF]
  • I. Pavlidis, M. Sullivan, R. Singh, and N. P. Papanikolopoulos, "Improving the Performance of Model-Based Target Tracking through Automatic Selection of Control Points", Robotics and Manufacturing, Recent Trends in Research and Applications, Vol. 6, pp. 711-716, M. Jamshidi, F. Pin, and P.Dauchez, Eds. ASME Press, New York, 1996.
  • I. Pavlidis, R. Singh, and N. P. Papanikolopoulos, "Recognition of On-Line Handwritten Patterns through Shape Metamorphosis", 13th International Conference on Pattern Recognition (ICPR), Vol. 3, pp. 18 - 22, 1996. [PDF]
  • V. Orlov, Ya. Dmitriev, and R. Singh, "Expert Shell Concepts in LAN Simulation", Krajowe Sympozjum Telekomunikacji, Referaty Sesji (Computer Networks Track), pp. 266-273, 1991.[PDF]
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